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Genetic relatedness of infecting and reinfecting respiratory syncytial virus strains identified in a birth cohort from rural Kenya. Journal of Infectious Diseases. 2012 Nov 15;206(10):1532-41.

Agoti CN, Mwihuri AG, Sande CJ, Onyango CO, Medley GF, Cane PA, Nokes DJ.

doi: 10.1093/infdis/jis570

The natural history of respiratory syncytial virus in a birth cohort: the influence of age and previous infection on reinfection and disease. American journal of epidemiology. 2012 Nov 1;176(9):794-802.

Ohuma EO, Okiro EA, Ochola R, Sande CJ, Cane PA, Medley GF, Bottomley C, Nokes DJ.

doi: 10.1093/aje/kws257

Treatment failure among Kenyan children with severe pneumonia–a cohort study. The Pediatric infectious disease journal. 2012 Sep;31(9):e152.

Webb C, Ngama M, Ngatia A, Shebbe M, Morpeth S, Mwarumba S, Bett A, Nokes DJ, Seale AC, Kazungu S, Munywoki P.

doi: 10.1097/INF.0b013e3182638012

Molecular epidemiology of human rhinovirus infections in Kilifi, coastal Kenya. Journal of medical virology. 2012 May 1;84(5):823-31.

Onyango CO, Welch SR, Munywoki PK, Agoti CN, Bett A, Ngama M, Myers R, Cane PA, Nokes DJ.

doi: 10.1002/jmv.23251

The incidence and clinical burden of respiratory syncytial virus disease identified through hospital outpatient presentations in Kenyan children. PLoS One. 2012 Dec 26;7(12):e52520.

Okiro EA, Ngama M, Bett A, Nokes DJ.

doi: 10.1371/journal.pone.0052520

A cost effectiveness and capacity analysis for the introduction of universal rotavirus vaccination in Kenya: comparison between Rotarix and RotaTeq vaccines. PloS one. 2012 Oct 24;7(10):e47511.

van Hoek AJ, Ngama M, Ismail A, Chuma J, Cheburet S, Mutonga D, Kamau T, Nokes DJ.

doi: 10.1371/journal.pone.0047511

A frequentist approach to estimating the force of infection for a respiratory disease using repeated measurement data from a birth cohort. Statistical methods in medical research. 2011 Oct;20(5):551-70.

Mwambi H, Ramroop S, White LJ, Okiro EA, Nokes DJ, Shkedy Z, Molenberghs G.

doi: 10.1177/0962280210385749

Improved detection of respiratory viruses in pediatric outpatients with acute respiratory illness by real-time PCR using nasopharyngeal flocked swabs. Journal of clinical microbiology. 2011 Sep 1;49(9):3365-7.

Munywoki PK, Hamid F, Mutunga M, Welch S, Cane P, Nokes DJ.

doi: 10.1128/JCM.02231-10

Added value of an oropharyngeal swab in detection of viruses in children hospitalized with lower respiratory tract infection. Journal of clinical microbiology. 2011 Jun 1;49(6):2318-20.

Hammitt LL, Kazungu S, Welch S, Bett A, Onyango CO, Gunson RN, Scott JA, Nokes DJ.

doi: 10.1128/JCM.02605-10

Seroprevalence, predictors and estimated incidence of maternal and neonatal Herpes Simplex Virus type 2 infection in semi-urban women in Kilifi, Kenya. BMC infectious diseases. 2011 May 31;11(1):155.

Nyiro JU, Sanders EJ, Ngetsa C, Wale S, Awuondo K, Bukusi E, Price MA, Amornkul PN, Nokes DJ.

doi: 10.1186/1471-2334-11-155

Sensitivity of hospital-based surveillance for severe disease: a geographic information system analysis of access to care in Kilifi district, Kenya. Bulletin of the World Health Organization. 2011 Feb;89(2):102-11.

Moïsi JC, Nokes DJ, Gatakaa H, Williams TN, Bauni E, Levine OS, Scott JA.

doi: 10.2471/BLT.10.080796

Intrapatient variation of the respiratory syncytial virus attachment protein gene. Journal of virology. 2010 Oct 1;84(19):10425-8.

Agoti CN, Mbisa JL, Bett A, Medley GF, Nokes DJ, Cane PA.

doi: 20660195

Rotavirus genetic diversity, disease association, and temporal change in hospitalized rural Kenyan children. Journal of Infectious Diseases. 2010 Sep 1;202(Supplement 1):S180-6.

Nokes DJ, Peenze I, Netshifhefhe L, Abwao J, De Beer MC, Seheri M, Williams TN, Page N, Steele D.

doi: 10.1086/653566

Global burden of acute lower respiratory infections due to respiratory syncytial virus in young children: a systematic review and meta-analysis. The Lancet. 2010 May 7;375(9725):1545-55.

Nair H, Nokes DJ, Gessner BD, Dherani M, Madhi SA, Singleton RJ, O'Brien KL, Roca A, Wright PF, Bruce N, Chandran A.

doi: 10.1016/S0140-6736(10)60206-1

Duration of shedding of respiratory syncytial virus in a community study of Kenyan children. BMC infectious diseases. 2010 Jan 22;10(1):15.

Okiro EA, White LJ, Ngama M, Cane PA, Medley GF, Nokes DJ.

doi: 10.1186/1471-2334-10-15

The level and duration of RSV-specific maternal IgG in infants in Kilifi Kenya. PloS one. 2009 Dec 2;4(12):e8088.

Ochola R, Sande C, Fegan G, Scott PD, Medley GF, Cane PA, Nokes DJ.

doi: 10.1371/journal.pone.0008088

Incidence and severity of respiratory syncytial virus pneumonia in rural Kenyan children identified through hospital surveillance. Clinical infectious diseases. 2009 Nov 15;49(9):1341-9.

Nokes DJ, Ngama M, Bett A, Abwao J, Munywoki P, English M, Scott JA, Cane PA, Medley GF.

doi: 10.1086/606055

Emergency triage assessment for hypoxaemia in neonates and young children in a Kenyan hospital: an observational study. Bulletin of the World Health Organization. 2009 Apr;87(4):263-70.

Mwaniki MK, Nokes DJ, Ignas J, Munywoki P, Ngama M, Newton CR, Maitland K, Berkley JA.

doi: 10.2471/BLT.07.049148

Evaluation of a measles vaccine campaign by oral-fluid surveys in a rural Kenyan district: interpretation of antibody prevalence data using mixture models. Epidemiology and infection. 2009 Feb 1;137(02):227-33.

Ohuma EO, Okiro EA, Bett A, Abwao J, Were S, Samuel D, Vyse A, Gay N, Brown DW, Nokes DJ.

doi: 10.1017/S0950268808000848

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